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Sample GSM1572961 Query DataSets for GSM1572961
Status Public on Jun 03, 2015
Title CRBM of subject 204 (Sample121)
Sample type genomic
Source name Brain CRBM
Organism Homo sapiens
Characteristics tissue: Brain CRBM
subject id: 204
Sex: F
predicted gender: female
age: 53
dna methylation age: 44.2586748605647
age acceleration with respect to noncerebellar samples: -1.03865669206209
cor sample vs gold standard: 0.830966706749894
mean abs difference sample vs gold standard: 0.0996343124503015
postmortem interval: 12
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.6638349
cg00000108 0.3837922
cg00000109 0.8417642
cg00000165 0.5636876
cg00000236 0.7428393
cg00000289 0.5428435
cg00000292 0.6573079
cg00000321 0.1778707
cg00000363 0.07683116
cg00000622 0.01924769
cg00000658 0.7774177
cg00000714 0.05482151
cg00000721 0.8911822
cg00000734 0.05012288
cg00000769 0.03881635
cg00000807 0.9076393
cg00000884 0.8164504
cg00000905 0.0621356
cg00000924 0.6299129
cg00000948 0.9030603

Total number of rows: 485577

Table truncated, full table size 10063 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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