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Sample GSM1572960 Query DataSets for GSM1572960
Status Public on Jun 03, 2015
Title Hippocampus of subject 239 (Sample120)
Sample type genomic
Source name Brain Hippocampus
Organism Homo sapiens
Characteristics tissue: Brain Hippocampus
subject id: 239
Sex: F
predicted gender: female
age: 100
dna methylation age: 78.4578067044306
age acceleration with respect to noncerebellar samples: 2.35135289910843
cor sample vs gold standard: 0.899535229029381
mean abs difference sample vs gold standard: 0.0828034956597412
postmortem interval: 26
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4438869
cg00000108 0.8679528
cg00000109 0.7805192
cg00000165 0.1360685
cg00000236 0.8278961
cg00000289 0.5403369
cg00000292 0.6154256
cg00000321 0.3757798
cg00000363 0.1031519
cg00000622 0.01763758
cg00000658 0.7595721
cg00000714 0.06272538
cg00000721 0.8978008
cg00000734 0.05159794
cg00000769 0.03860781
cg00000807 0.8925213
cg00000884 0.7789067
cg00000905 0.05897051
cg00000924 0.5992426
cg00000948 0.9096212

Total number of rows: 485577

Table truncated, full table size 10042 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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