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Sample GSM1572959 Query DataSets for GSM1572959
Status Public on Jun 03, 2015
Title Hippocampus of subject 45 (Sample119)
Sample type genomic
Source name Brain Hippocampus
Organism Homo sapiens
Characteristics tissue: Brain Hippocampus
subject id: 45
Sex: M
predicted gender: male
age: 53
dna methylation age: 45.0772035681134
age acceleration with respect to noncerebellar samples: -0.220127984513397
cor sample vs gold standard: 0.885884489963807
mean abs difference sample vs gold standard: 0.0902390372623359
postmortem interval: 23
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.5067677
cg00000108 0.8969219
cg00000109 0.7365822
cg00000165 0.2206452
cg00000236 0.7759067
cg00000289 0.3370128
cg00000292 0.6604835
cg00000321 0.4399903
cg00000363 0.1954023
cg00000622 0.02652151
cg00000658 0.7947549
cg00000714 0.1005901
cg00000721 0.8684968
cg00000734 0.07280073
cg00000769 0.04559517
cg00000807 0.885974
cg00000884 0.7645277
cg00000905 0.1034581
cg00000924 0.6224313
cg00000948 0.9141129

Total number of rows: 485577

Table truncated, full table size 10014 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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