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Sample GSM1572958 Query DataSets for GSM1572958
Status Public on Jun 03, 2015
Title Parietal of subject 437 (Sample118)
Sample type genomic
Source name Brain Parietal
Organism Homo sapiens
Characteristics tissue: Brain Parietal
subject id: 437
Sex: F
predicted gender: female
age: 36
dna methylation age: 32.0311339013907
age acceleration with respect to noncerebellar samples: -2.12247258111223
cor sample vs gold standard: 0.88574500981622
mean abs difference sample vs gold standard: 0.0925115345644336
postmortem interval: 11
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4733939
cg00000108 0.8911967
cg00000109 0.7622064
cg00000165 0.2055634
cg00000236 0.8143236
cg00000289 0.4170507
cg00000292 0.7706293
cg00000321 0.5399657
cg00000363 0.1570778
cg00000622 0.02938365
cg00000658 0.8353081
cg00000714 0.1188252
cg00000721 0.8271326
cg00000734 0.09888911
cg00000769 0.05164002
cg00000807 0.9074799
cg00000884 0.7962373
cg00000905 0.1227154
cg00000924 0.670662
cg00000948 0.8549432

Total number of rows: 485577

Table truncated, full table size 10011 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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