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Sample GSM1572957 Query DataSets for GSM1572957
Status Public on Jun 03, 2015
Title Hippocampus of subject 185 (Sample117)
Sample type genomic
 
Source name Brain Hippocampus
Organism Homo sapiens
Characteristics tissue: Brain Hippocampus
subject id: 185
Sex: M
predicted gender: male
age: 85
dna methylation age: 68.3190846346005
age acceleration with respect to noncerebellar samples: 2.04532942056409
cor sample vs gold standard: 0.904788334659694
mean abs difference sample vs gold standard: 0.0841823780474403
postmortem interval: 12
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.4088514
cg00000108 0.865312
cg00000109 0.63586
cg00000165 0.2675457
cg00000236 0.7381118
cg00000289 0.4463895
cg00000292 0.6308686
cg00000321 NULL
cg00000363 0.1811631
cg00000622 0.01985083
cg00000658 0.7917321
cg00000714 0.1168372
cg00000721 0.8500983
cg00000734 0.07820129
cg00000769 0.03947804
cg00000807 0.8915372
cg00000884 0.8207611
cg00000905 0.1224724
cg00000924 0.6479536
cg00000948 0.8690813

Total number of rows: 485577

Table truncated, full table size 10015 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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