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Sample GSM1572953 Query DataSets for GSM1572953
Status Public on Jun 03, 2015
Title Parietal of subject 315 (Sample113)
Sample type genomic
 
Source name Brain Parietal
Organism Homo sapiens
Characteristics tissue: Brain Parietal
subject id: 315
Sex: F
predicted gender: female
age: 63
dna methylation age: 54.4483385927392
age acceleration with respect to noncerebellar samples: 2.5958746459219
cor sample vs gold standard: 0.886548741502672
mean abs difference sample vs gold standard: 0.0867919206020574
postmortem interval: 16
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.5329319
cg00000108 0.8545672
cg00000109 0.6817017
cg00000165 0.2118074
cg00000236 0.8020466
cg00000289 0.4344952
cg00000292 0.648172
cg00000321 0.4591384
cg00000363 0.1706667
cg00000622 0.02251161
cg00000658 0.7898931
cg00000714 0.1048378
cg00000721 0.866485
cg00000734 0.06433662
cg00000769 0.04686003
cg00000807 0.9142774
cg00000884 0.761772
cg00000905 0.1302158
cg00000924 0.5763772
cg00000948 0.9230415

Total number of rows: 485577

Table truncated, full table size 10025 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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