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Sample GSM1572952 Query DataSets for GSM1572952
Status Public on Jun 03, 2015
Title Caudate Nucleus of subject 267 (Sample112)
Sample type genomic
Source name Brain Caudate Nucleus
Organism Homo sapiens
Characteristics tissue: Brain Caudate Nucleus
subject id: 267
Sex: M
predicted gender: female
age: 45
dna methylation age: 37.5181845921183
age acceleration with respect to noncerebellar samples: -2.53504104515608
cor sample vs gold standard: 0.897387686858395
mean abs difference sample vs gold standard: 0.0841664987151914
postmortem interval: 12
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.5492228
cg00000108 0.9069161
cg00000109 0.7121391
cg00000165 0.1803698
cg00000236 0.8167405
cg00000289 0.5743979
cg00000292 0.6761211
cg00000321 0.5043093
cg00000363 0.2630575
cg00000622 0.0304989
cg00000658 0.810955
cg00000714 0.126955
cg00000721 0.8525956
cg00000734 0.07227035
cg00000769 0.05277293
cg00000807 0.8812886
cg00000884 0.7857872
cg00000905 0.1224374
cg00000924 0.6451257
cg00000948 0.9088702

Total number of rows: 485577

Table truncated, full table size 10027 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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