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Sample GSM1572951 Query DataSets for GSM1572951
Status Public on Jun 03, 2015
Title Visual Cortex of subject 267 (Sample111)
Sample type genomic
Source name Brain Visual Cortex
Organism Homo sapiens
Characteristics tissue: Brain Visual Cortex
subject id: 267
Sex: M
predicted gender: female
age: 45
dna methylation age: 38.7588623560249
age acceleration with respect to noncerebellar samples: -1.29436328124949
cor sample vs gold standard: 0.884960132164474
mean abs difference sample vs gold standard: 0.0883504965446481
postmortem interval: 12
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.5831949
cg00000108 0.902935
cg00000109 0.70749
cg00000165 0.1595142
cg00000236 0.8386567
cg00000289 0.6143695
cg00000292 0.6833841
cg00000321 0.5207357
cg00000363 0.1976595
cg00000622 0.03404516
cg00000658 0.7788874
cg00000714 0.1359283
cg00000721 0.8754347
cg00000734 0.05827039
cg00000769 0.07350601
cg00000807 0.8970292
cg00000884 0.7718654
cg00000905 0.08785108
cg00000924 0.6354018
cg00000948 0.9116657

Total number of rows: 485577

Table truncated, full table size 10031 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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