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Sample GSM1572949 Query DataSets for GSM1572949
Status Public on Jun 03, 2015
Title Motor Cortex of subject 513 (Sample109)
Sample type genomic
Source name Brain Motor Cortex
Organism Homo sapiens
Characteristics tissue: Brain Motor Cortex
subject id: 513
Sex: M
predicted gender: male
age: 41
dna methylation age: 37.2381694884275
age acceleration with respect to noncerebellar samples: -0.193003191170682
cor sample vs gold standard: 0.888917576336623
mean abs difference sample vs gold standard: 0.0825631973392288
postmortem interval: 16
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.3180708
cg00000108 0.8697374
cg00000109 0.6858919
cg00000165 0.1434613
cg00000236 0.7331576
cg00000289 0.3508701
cg00000292 0.6843294
cg00000321 0.4225008
cg00000363 0.1146591
cg00000622 0.0151954
cg00000658 0.8085427
cg00000714 0.09741404
cg00000721 0.8729971
cg00000734 0.04208741
cg00000769 0.0407754
cg00000807 0.8915532
cg00000884 0.7379639
cg00000905 0.08220746
cg00000924 0.6026396
cg00000948 0.8794082

Total number of rows: 485577

Table truncated, full table size 10042 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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