GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1572948 Query DataSets for GSM1572948
Status Public on Jun 03, 2015
Title Occipital of subject 45 (Sample108)
Sample type genomic
Source name Brain Occipital
Organism Homo sapiens
Characteristics tissue: Brain Occipital
subject id: 45
Sex: M
predicted gender: male
age: 53
dna methylation age: 34.6134227967948
age acceleration with respect to noncerebellar samples: -10.683908755832
cor sample vs gold standard: 0.889800814554802
mean abs difference sample vs gold standard: 0.0842261443267276
postmortem interval: 23
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4810629
cg00000108 0.8286037
cg00000109 0.6102171
cg00000165 0.2200557
cg00000236 0.7155756
cg00000289 0.4698319
cg00000292 0.6611418
cg00000321 0.4123074
cg00000363 0.1511854
cg00000622 0.02121108
cg00000658 0.7641887
cg00000714 0.1031451
cg00000721 0.8074915
cg00000734 0.06515947
cg00000769 0.0340673
cg00000807 0.8923514
cg00000884 0.7291418
cg00000905 0.09822602
cg00000924 0.6213976
cg00000948 0.8927296

Total number of rows: 485577

Table truncated, full table size 10029 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap