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Sample GSM1572947 Query DataSets for GSM1572947
Status Public on Jun 03, 2015
Title Caudate Nucleus of subject 407 (Sample107)
Sample type genomic
 
Source name Brain Caudate Nucleus
Organism Homo sapiens
Characteristics tissue: Brain Caudate Nucleus
subject id: 407
Sex: M
predicted gender: male
age: 81
dna methylation age: 61.9847315685518
age acceleration with respect to noncerebellar samples: -1.6669706878084
cor sample vs gold standard: 0.877108887809422
mean abs difference sample vs gold standard: 0.086070064139677
postmortem interval: 7
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.4527228
cg00000108 0.9051852
cg00000109 0.7218513
cg00000165 0.1096476
cg00000236 0.8254179
cg00000289 0.4524697
cg00000292 0.6419539
cg00000321 0.557791
cg00000363 0.1862255
cg00000622 0.01311143
cg00000658 0.7853003
cg00000714 0.1867184
cg00000721 0.9028961
cg00000734 0.0439857
cg00000769 0.02905518
cg00000807 0.918837
cg00000884 0.7885541
cg00000905 0.06274877
cg00000924 0.6273489
cg00000948 0.9110703

Total number of rows: 485577

Table truncated, full table size 10050 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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