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Sample GSM1572944 Query DataSets for GSM1572944
Status Public on Jun 03, 2015
Title Sensory Cortex of subject 421 (Sample104)
Sample type genomic
Source name Brain Sensory Cortex
Organism Homo sapiens
Characteristics tissue: Brain Sensory Cortex
subject id: 421
Sex: M
predicted gender: male
age: 83
dna methylation age: 61.4349362091224
age acceleration with respect to noncerebellar samples: -3.52779252607591
cor sample vs gold standard: 0.88014831274979
mean abs difference sample vs gold standard: 0.0860211371125364
postmortem interval: 14
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.3428776
cg00000108 0.9376141
cg00000109 0.657784
cg00000165 0.1372451
cg00000236 0.8835173
cg00000289 0.3893528
cg00000292 0.5759018
cg00000321 0.4289782
cg00000363 0.1268188
cg00000622 0.01442268
cg00000658 0.8404717
cg00000714 0.1403427
cg00000721 0.8963231
cg00000734 0.04439627
cg00000769 0.02794685
cg00000807 0.8855156
cg00000884 0.7819988
cg00000905 0.06277223
cg00000924 0.6195535
cg00000948 0.8811389

Total number of rows: 485577

Table truncated, full table size 10047 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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