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Sample GSM1572943 Query DataSets for GSM1572943
Status Public on Jun 03, 2015
Title Hippocampus of subject 7 (Sample103)
Sample type genomic
 
Source name Brain Hippocampus
Organism Homo sapiens
Characteristics tissue: Brain Hippocampus
subject id: 7
Sex: M
predicted gender: male
age: 80
dna methylation age: 62.5496992083842
age acceleration with respect to noncerebellar samples: -0.446489808556954
cor sample vs gold standard: 0.889274515016332
mean abs difference sample vs gold standard: 0.0827519504004231
postmortem interval: 22
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.354852
cg00000108 0.8558443
cg00000109 0.6524178
cg00000165 0.1669086
cg00000236 0.7123494
cg00000289 0.3586819
cg00000292 0.6499949
cg00000321 0.2910522
cg00000363 0.1289582
cg00000622 0.01991082
cg00000658 0.8224326
cg00000714 0.09295861
cg00000721 0.8697636
cg00000734 0.0507368
cg00000769 0.05286011
cg00000807 0.888624
cg00000884 0.7012105
cg00000905 0.06009245
cg00000924 0.6313388
cg00000948 0.9084417

Total number of rows: 485577

Table truncated, full table size 10040 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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