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Sample GSM1572940 Query DataSets for GSM1572940
Status Public on Jun 03, 2015
Title Frontal of subject 254 (Sample100)
Sample type genomic
 
Source name Brain Frontal
Organism Homo sapiens
Characteristics tissue: Brain Frontal
subject id: 254
Sex: F
predicted gender: female
age: 93
dna methylation age: 60.7128811936802
age acceleration with respect to noncerebellar samples: -10.8049799357086
cor sample vs gold standard: 0.901101441027247
mean abs difference sample vs gold standard: 0.0827910351439259
postmortem interval: 4
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.5155896
cg00000108 0.909998
cg00000109 0.7138233
cg00000165 0.1837101
cg00000236 0.8339556
cg00000289 0.4402702
cg00000292 0.7054636
cg00000321 0.401355
cg00000363 0.1368976
cg00000622 0.02176891
cg00000658 0.8367528
cg00000714 0.09159499
cg00000721 0.8870386
cg00000734 0.06071265
cg00000769 0.04002486
cg00000807 0.9024302
cg00000884 0.7334759
cg00000905 0.08479789
cg00000924 0.6609183
cg00000948 0.909921

Total number of rows: 485577

Table truncated, full table size 10030 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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