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Sample GSM1572939 Query DataSets for GSM1572939
Status Public on Jun 03, 2015
Title Motor Cortex of subject 467 (Sample99)
Sample type genomic
Source name Brain Motor Cortex
Organism Homo sapiens
Characteristics tissue: Brain Motor Cortex
subject id: 467
Sex: M
predicted gender: male
age: 41
dna methylation age: 34.9854782922269
age acceleration with respect to noncerebellar samples: -2.44569438737128
cor sample vs gold standard: 0.887639792293442
mean abs difference sample vs gold standard: 0.084165394766971
postmortem interval: 16
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4900753
cg00000108 0.907486
cg00000109 0.689772
cg00000165 0.2199812
cg00000236 0.7813839
cg00000289 0.4486193
cg00000292 0.7182475
cg00000321 0.4598405
cg00000363 0.1413581
cg00000622 0.007075556
cg00000658 0.8203834
cg00000714 0.08034863
cg00000721 0.8814734
cg00000734 0.0518381
cg00000769 0.03445132
cg00000807 0.932113
cg00000884 0.7207624
cg00000905 0.1268154
cg00000924 0.6558514
cg00000948 0.9191066

Total number of rows: 485577

Table truncated, full table size 10040 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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