GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1572938 Query DataSets for GSM1572938
Status Public on Jun 03, 2015
Title Hippocampus of subject 455 (Sample98)
Sample type genomic
Source name Brain Hippocampus
Organism Homo sapiens
Characteristics tissue: Brain Hippocampus
subject id: 455
Sex: F
predicted gender: female
age: 65
dna methylation age: 47.3630972737
age acceleration with respect to noncerebellar samples: -5.8003931519554
cor sample vs gold standard: 0.892534639582642
mean abs difference sample vs gold standard: 0.0833627294175963
postmortem interval: 9
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4519898
cg00000108 0.8846154
cg00000109 0.7075738
cg00000165 0.2004773
cg00000236 0.7635231
cg00000289 0.4810762
cg00000292 0.7345916
cg00000321 0.418286
cg00000363 0.2055532
cg00000622 0.02283344
cg00000658 0.8171588
cg00000714 0.08650776
cg00000721 0.8740013
cg00000734 0.05019593
cg00000769 0.03974563
cg00000807 0.9124038
cg00000884 0.6829545
cg00000905 0.08993506
cg00000924 0.6604214
cg00000948 0.9170423

Total number of rows: 485577

Table truncated, full table size 10031 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap