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Sample GSM1572937 Query DataSets for GSM1572937
Status Public on Jun 03, 2015
Title Mid of subject 45 (Sample97)
Sample type genomic
Source name Brain MidBrain
Organism Homo sapiens
Characteristics tissue: Brain MidBrain
subject id: 45
Sex: M
predicted gender: male
age: 53
dna methylation age: 41.6075925286288
age acceleration with respect to noncerebellar samples: -3.68973902399799
cor sample vs gold standard: 0.895360914142992
mean abs difference sample vs gold standard: 0.0807591868197439
postmortem interval: 23
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4168607
cg00000108 0.8680226
cg00000109 0.5684406
cg00000165 0.439846
cg00000236 0.7750062
cg00000289 0.4196217
cg00000292 0.6882389
cg00000321 0.232606
cg00000363 0.1350397
cg00000622 0.01156647
cg00000658 0.8139627
cg00000714 0.07875422
cg00000721 0.9193019
cg00000734 0.04594535
cg00000769 0.03691058
cg00000807 0.899714
cg00000884 0.6919753
cg00000905 0.09168444
cg00000924 0.5881805
cg00000948 0.9125377

Total number of rows: 485577

Table truncated, full table size 10041 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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