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Sample GSM1572934 Query DataSets for GSM1572934
Status Public on Jun 03, 2015
Title Mid of subject 254 (Sample94)
Sample type genomic
Source name Brain MidBrain
Organism Homo sapiens
Characteristics tissue: Brain MidBrain
subject id: 254
Sex: F
predicted gender: female
age: 93
dna methylation age: 62.1400327181201
age acceleration with respect to noncerebellar samples: -9.37782841126872
cor sample vs gold standard: 0.899672537223189
mean abs difference sample vs gold standard: 0.08320049773236
postmortem interval: 4
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.547057
cg00000108 0.9279279
cg00000109 0.6886148
cg00000165 0.3242647
cg00000236 0.7971466
cg00000289 0.534318
cg00000292 0.6405757
cg00000321 0.2861465
cg00000363 0.2307846
cg00000622 0.01643385
cg00000658 0.8116621
cg00000714 0.1179678
cg00000721 0.8842202
cg00000734 0.06401749
cg00000769 0.0464196
cg00000807 0.9084757
cg00000884 0.7364119
cg00000905 0.1250703
cg00000924 0.7301933
cg00000948 0.9051998

Total number of rows: 485577

Table truncated, full table size 10026 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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