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Sample GSM1572933 Query DataSets for GSM1572933
Status Public on Jun 03, 2015
Title Mid of subject 379 (Sample93)
Sample type genomic
Source name Brain MidBrain
Organism Homo sapiens
Characteristics tissue: Brain MidBrain
subject id: 379
Sex: F
predicted gender: female
age: 96
dna methylation age: 73.393310116234
age acceleration with respect to noncerebellar samples: -0.0910907314119527
cor sample vs gold standard: 0.897567605291013
mean abs difference sample vs gold standard: 0.0827747988606723
postmortem interval: NA
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4614039
cg00000108 0.8858596
cg00000109 0.6566402
cg00000165 0.2554179
cg00000236 0.737867
cg00000289 0.4256311
cg00000292 0.6427906
cg00000321 0.2780963
cg00000363 0.1485022
cg00000622 0.02416907
cg00000658 0.8394558
cg00000714 0.1541854
cg00000721 0.884969
cg00000734 0.05432288
cg00000769 0.05077481
cg00000807 0.9379001
cg00000884 0.7804289
cg00000905 0.1595372
cg00000924 0.6190928
cg00000948 0.9003205

Total number of rows: 485577

Table truncated, full table size 10028 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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