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Sample GSM1572932 Query DataSets for GSM1572932
Status Public on Jun 03, 2015
Title Mid of subject 107 (Sample92)
Sample type genomic
Source name Brain MidBrain
Organism Homo sapiens
Characteristics tissue: Brain MidBrain
subject id: 107
Sex: F
predicted gender: female
age: 114
dna methylation age: 82.2956398013197
age acceleration with respect to noncerebellar samples: -2.98799935586918
cor sample vs gold standard: 0.901049625553549
mean abs difference sample vs gold standard: 0.0807059414516286
postmortem interval: 13
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4340935
cg00000108 0.8152769
cg00000109 0.6629271
cg00000165 0.202514
cg00000236 0.6632282
cg00000289 0.4719801
cg00000292 0.6483517
cg00000321 0.3845113
cg00000363 0.1584053
cg00000622 0.01352121
cg00000658 0.8050211
cg00000714 0.1814775
cg00000721 0.8573888
cg00000734 0.06284384
cg00000769 0.04510712
cg00000807 0.8875171
cg00000884 0.6926606
cg00000905 0.1406859
cg00000924 0.6147622
cg00000948 0.8955938

Total number of rows: 485577

Table truncated, full table size 10034 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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