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Sample GSM1572931 Query DataSets for GSM1572931
Status Public on Jun 03, 2015
Title Hippocampus of subject 34 (Sample91)
Sample type genomic
Source name Brain Hippocampus
Organism Homo sapiens
Characteristics tissue: Brain Hippocampus
subject id: 34
Sex: F
predicted gender: female
age: 63
dna methylation age: 53.8283175422669
age acceleration with respect to noncerebellar samples: 1.97585359544961
cor sample vs gold standard: 0.880577340730179
mean abs difference sample vs gold standard: 0.0869638548262053
postmortem interval: 28
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4838387
cg00000108 0.902865
cg00000109 0.6862659
cg00000165 0.1499839
cg00000236 0.8008874
cg00000289 0.4970213
cg00000292 0.6843519
cg00000321 0.4929596
cg00000363 0.2166329
cg00000622 0.01001857
cg00000658 0.8459917
cg00000714 0.167879
cg00000721 0.9019891
cg00000734 0.06283592
cg00000769 0.04984331
cg00000807 0.9081564
cg00000884 0.7630699
cg00000905 0.09117491
cg00000924 0.6922903
cg00000948 0.9293247

Total number of rows: 485577

Table truncated, full table size 10037 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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