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Sample GSM1572929 Query DataSets for GSM1572929
Status Public on Jun 03, 2015
Title Mid of subject 339 (Sample89)
Sample type genomic
Source name Brain MidBrain
Organism Homo sapiens
Characteristics tissue: Brain MidBrain
subject id: 339
Sex: F
predicted gender: female
age: 80
dna methylation age: 61.0262155232714
age acceleration with respect to noncerebellar samples: -1.96997349366976
cor sample vs gold standard: 0.899293449146835
mean abs difference sample vs gold standard: 0.0809004423585082
postmortem interval: 10
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.5102226
cg00000108 0.8877369
cg00000109 0.7059891
cg00000165 0.4803609
cg00000236 0.7872567
cg00000289 0.4457478
cg00000292 0.7146821
cg00000321 0.3385325
cg00000363 0.1551957
cg00000622 0.03096497
cg00000658 0.8350182
cg00000714 0.1252367
cg00000721 0.9044966
cg00000734 0.07491697
cg00000769 0.03720384
cg00000807 0.9104994
cg00000884 0.7658743
cg00000905 0.08387698
cg00000924 0.6429018
cg00000948 0.910548

Total number of rows: 485577

Table truncated, full table size 10031 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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