NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1572927 Query DataSets for GSM1572927
Status Public on Jun 03, 2015
Title Cingulate Gyrus of subject 71 (Sample87)
Sample type genomic
 
Source name Brain Cingulate Gyrus
Organism Homo sapiens
Characteristics tissue: Brain Cingulate Gyrus
subject id: 71
Sex: M
predicted gender: male
age: 53
dna methylation age: 47.9339917191759
age acceleration with respect to noncerebellar samples: 2.63666016654911
cor sample vs gold standard: 0.889591988914912
mean abs difference sample vs gold standard: 0.0855824905707131
postmortem interval: 16.5
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.5309697
cg00000108 0.9223204
cg00000109 0.7126079
cg00000165 0.1503876
cg00000236 0.804302
cg00000289 0.5143495
cg00000292 0.7002718
cg00000321 0.4167151
cg00000363 0.1686987
cg00000622 0.01659657
cg00000658 0.8370996
cg00000714 0.1326527
cg00000721 0.8893795
cg00000734 0.05948013
cg00000769 0.06190509
cg00000807 0.8915105
cg00000884 0.850939
cg00000905 0.08840448
cg00000924 0.5884884
cg00000948 0.9038057

Total number of rows: 485577

Table truncated, full table size 10042 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap