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Sample GSM1572923 Query DataSets for GSM1572923
Status Public on Jun 03, 2015
Title CRBM of subject 149 (Sample83)
Sample type genomic
 
Source name Brain CRBM
Organism Homo sapiens
Characteristics tissue: Brain CRBM
subject id: 149
Sex: M
predicted gender: male
age: 64
dna methylation age: 46.5295647308215
age acceleration with respect to noncerebellar samples: -5.97841245541485
cor sample vs gold standard: 0.836239132761007
mean abs difference sample vs gold standard: 0.0989430644901008
postmortem interval: 29
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.6164274
cg00000108 0.4809617
cg00000109 0.8943359
cg00000165 0.4048626
cg00000236 0.6988611
cg00000289 0.5703473
cg00000292 0.6295901
cg00000321 0.1809262
cg00000363 0.07617127
cg00000622 0.00963913
cg00000658 0.8127534
cg00000714 0.04557282
cg00000721 0.9237958
cg00000734 0.05976521
cg00000769 0.04314721
cg00000807 0.9177573
cg00000884 0.8017329
cg00000905 0.07196402
cg00000924 0.6585539
cg00000948 0.912356

Total number of rows: 485577

Table truncated, full table size 10066 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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