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Sample GSM1572922 Query DataSets for GSM1572922
Status Public on Jun 03, 2015
Title Frontal of subject 165 (Sample82)
Sample type genomic
 
Source name Brain Frontal
Organism Homo sapiens
Characteristics tissue: Brain Frontal
subject id: 165
Sex: M
predicted gender: male
age: 100
dna methylation age: 69.5420306742429
age acceleration with respect to noncerebellar samples: -6.56442313107927
cor sample vs gold standard: 0.887232027270129
mean abs difference sample vs gold standard: 0.08974716987852
postmortem interval: 52
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.5163326
cg00000108 0.8448185
cg00000109 0.4089947
cg00000165 0.240411
cg00000236 0.5673725
cg00000289 0.2602105
cg00000292 0.7019471
cg00000321 0.4924875
cg00000363 0.2377377
cg00000622 0.0327885
cg00000658 0.7953247
cg00000714 0.1557481
cg00000721 0.7698675
cg00000734 0.05358643
cg00000769 0.04005577
cg00000807 0.8966774
cg00000884 0.7250409
cg00000905 0.1519945
cg00000924 0.627252
cg00000948 0.9173937

Total number of rows: 485577

Table truncated, full table size 10015 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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