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Sample GSM1572921 Query DataSets for GSM1572921
Status Public on Jun 03, 2015
Title Hippocampus of subject 215 (Sample81)
Sample type genomic
Source name Brain Hippocampus
Organism Homo sapiens
Characteristics tissue: Brain Hippocampus
subject id: 215
Sex: F
predicted gender: female
age: 38
dna methylation age: 31.6145312432836
age acceleration with respect to noncerebellar samples: -3.85010171805743
cor sample vs gold standard: 0.894932228197125
mean abs difference sample vs gold standard: 0.0839809948115267
postmortem interval: 24
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4457581
cg00000108 0.7863637
cg00000109 0.6819894
cg00000165 0.1995968
cg00000236 0.5467751
cg00000289 0.3720828
cg00000292 0.7132679
cg00000321 0.5453508
cg00000363 0.1667781
cg00000622 0.02456089
cg00000658 0.7645655
cg00000714 0.1030094
cg00000721 0.7464046
cg00000734 0.06442002
cg00000769 0.03381924
cg00000807 0.8809425
cg00000884 0.5761343
cg00000905 0.1763441
cg00000924 0.6042328
cg00000948 0.9081002

Total number of rows: 485577

Table truncated, full table size 10023 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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