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Sample GSM1572920 Query DataSets for GSM1572920
Status Public on Jun 03, 2015
Title Sensory Cortex of subject 365 (Sample80)
Sample type genomic
Source name Brain Sensory Cortex
Organism Homo sapiens
Characteristics tissue: Brain Sensory Cortex
subject id: 365
Sex: M
predicted gender: male
age: 64
dna methylation age: 50.0965190578619
age acceleration with respect to noncerebellar samples: -2.41145812837445
cor sample vs gold standard: 0.893638853036083
mean abs difference sample vs gold standard: 0.084791355283213
postmortem interval: 17
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4411086
cg00000108 0.9135026
cg00000109 0.6830432
cg00000165 0.2131541
cg00000236 0.745404
cg00000289 0.4423888
cg00000292 0.7281835
cg00000321 0.3584405
cg00000363 0.1466692
cg00000622 0.02675427
cg00000658 0.7875075
cg00000714 0.08722309
cg00000721 0.8790036
cg00000734 0.05475719
cg00000769 0.04682183
cg00000807 0.9071347
cg00000884 0.8362777
cg00000905 0.1526203
cg00000924 0.6896346
cg00000948 0.8905615

Total number of rows: 485577

Table truncated, full table size 10024 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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