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Sample GSM1572919 Query DataSets for GSM1572919
Status Public on Jun 03, 2015
Title Mid of subject 149 (Sample79)
Sample type genomic
Source name Brain MidBrain
Organism Homo sapiens
Characteristics tissue: Brain MidBrain
subject id: 149
Sex: M
predicted gender: male
age: 64
dna methylation age: 38.8552735083181
age acceleration with respect to noncerebellar samples: -13.6527036779182
cor sample vs gold standard: 0.874135502609608
mean abs difference sample vs gold standard: 0.0937401312941628
postmortem interval: 29
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.5375654
cg00000108 0.7257591
cg00000109 0.4140508
cg00000165 0.3213297
cg00000236 0.4532502
cg00000289 0.3053914
cg00000292 0.7272466
cg00000321 0.3408034
cg00000363 0.1864268
cg00000622 0.02208584
cg00000658 0.7347515
cg00000714 0.1611974
cg00000721 0.560087
cg00000734 0.06899557
cg00000769 0.03738852
cg00000807 0.8869152
cg00000884 0.6435006
cg00000905 0.1910828
cg00000924 0.6043623
cg00000948 0.8973072

Total number of rows: 485577

Table truncated, full table size 10021 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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