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Sample GSM1572918 Query DataSets for GSM1572918
Status Public on Jun 03, 2015
Title Hippocampus of subject 194 (Sample78)
Sample type genomic
Source name Brain Hippocampus
Organism Homo sapiens
Characteristics tissue: Brain Hippocampus
subject id: 194
Sex: F
predicted gender: female
age: 81
dna methylation age: 49.122590394215
age acceleration with respect to noncerebellar samples: -14.5291118621452
cor sample vs gold standard: 0.876489821229337
mean abs difference sample vs gold standard: 0.0936804439300116
postmortem interval: 23
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4381057
cg00000108 0.510625
cg00000109 0.3143713
cg00000165 0.2086721
cg00000236 0.5677083
cg00000289 0.3355465
cg00000292 0.7133101
cg00000321 0.4938218
cg00000363 0.2334887
cg00000622 0.03437962
cg00000658 0.7326203
cg00000714 0.133238
cg00000721 0.4973262
cg00000734 0.05894177
cg00000769 0.03639434
cg00000807 0.8128786
cg00000884 0.5425532
cg00000905 0.2762763
cg00000924 0.5212337
cg00000948 0.905892

Total number of rows: 485577

Table truncated, full table size 10019 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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