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Sample GSM1572917 Query DataSets for GSM1572917
Status Public on Jun 03, 2015
Title Temporal of subject 225 (Sample77)
Sample type genomic
Source name Brain Temporal
Organism Homo sapiens
Characteristics tissue: Brain Temporal
subject id: 225
Sex: M
predicted gender: male
age: 64
dna methylation age: 49.3298247122522
age acceleration with respect to noncerebellar samples: -3.17815247398415
cor sample vs gold standard: 0.8815552311379
mean abs difference sample vs gold standard: 0.0903040587727751
postmortem interval: 34
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.424854
cg00000108 0.6032548
cg00000109 0.4711964
cg00000165 0.2380623
cg00000236 0.4436043
cg00000289 0.4411529
cg00000292 0.7385767
cg00000321 0.4004016
cg00000363 0.1294657
cg00000622 0.0242692
cg00000658 0.7078502
cg00000714 0.1074071
cg00000721 0.5758533
cg00000734 0.05988827
cg00000769 0.04998738
cg00000807 0.8723903
cg00000884 0.5135357
cg00000905 0.165043
cg00000924 0.6148465
cg00000948 0.8774678

Total number of rows: 485577

Table truncated, full table size 10025 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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