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Sample GSM1572914 Query DataSets for GSM1572914
Status Public on Jun 03, 2015
Title Caudate Nucleus of subject 421 (Sample74)
Sample type genomic
 
Source name Brain Caudate Nucleus
Organism Homo sapiens
Characteristics tissue: Brain Caudate Nucleus
subject id: 421
Sex: M
predicted gender: male
age: 83
dna methylation age: 38.1462555091874
age acceleration with respect to noncerebellar samples: -26.8164732260109
cor sample vs gold standard: 0.877552819277065
mean abs difference sample vs gold standard: 0.0897242253799949
postmortem interval: 14
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.4371428
cg00000108 0.7405542
cg00000109 0.3550577
cg00000165 0.2082043
cg00000236 0.5989473
cg00000289 0.2761194
cg00000292 0.7534454
cg00000321 0.5098801
cg00000363 0.1080283
cg00000622 0.01963069
cg00000658 0.7325786
cg00000714 0.1391535
cg00000721 0.7260755
cg00000734 0.06004751
cg00000769 0.0383558
cg00000807 0.923644
cg00000884 0.5329567
cg00000905 0.2822757
cg00000924 0.6275022
cg00000948 0.9003107

Total number of rows: 485577

Table truncated, full table size 10026 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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