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Sample GSM1572913 Query DataSets for GSM1572913
Status Public on Jun 03, 2015
Title Mid of subject 215 (Sample73)
Sample type genomic
 
Source name Brain MidBrain
Organism Homo sapiens
Characteristics tissue: Brain MidBrain
subject id: 215
Sex: F
predicted gender: female
age: 38
dna methylation age: 16.2216412765812
age acceleration with respect to noncerebellar samples: -19.2429916847598
cor sample vs gold standard: 0.896457147955663
mean abs difference sample vs gold standard: 0.0859804894350662
postmortem interval: 24
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.4593807
cg00000108 0.8692552
cg00000109 0.6094353
cg00000165 0.5224504
cg00000236 0.8215197
cg00000289 0.5710368
cg00000292 0.7579096
cg00000321 0.3054235
cg00000363 0.2198926
cg00000622 0.02347398
cg00000658 0.8524861
cg00000714 0.104415
cg00000721 0.8931138
cg00000734 0.0816415
cg00000769 0.03044415
cg00000807 0.9143055
cg00000884 0.8267882
cg00000905 0.1078593
cg00000924 0.7084877
cg00000948 0.925074

Total number of rows: 485577

Table truncated, full table size 10019 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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