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Sample GSM1572912 Query DataSets for GSM1572912
Status Public on Jun 03, 2015
Title Parietal of subject 267 (Sample72)
Sample type genomic
Source name Brain Parietal
Organism Homo sapiens
Characteristics tissue: Brain Parietal
subject id: 267
Sex: M
predicted gender: female
age: 45
dna methylation age: 36.0248196465714
age acceleration with respect to noncerebellar samples: -4.02840599070299
cor sample vs gold standard: 0.891051305766453
mean abs difference sample vs gold standard: 0.0838727133219978
postmortem interval: 12
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4851884
cg00000108 0.9436666
cg00000109 0.6277933
cg00000165 0.1758454
cg00000236 0.6743147
cg00000289 0.4654222
cg00000292 0.7306946
cg00000321 0.5330325
cg00000363 0.2076352
cg00000622 0.01177581
cg00000658 0.8090858
cg00000714 0.09562527
cg00000721 0.8931955
cg00000734 0.06061641
cg00000769 0.04130982
cg00000807 0.8925809
cg00000884 0.706744
cg00000905 0.09698079
cg00000924 0.6168366
cg00000948 0.8995277

Total number of rows: 485577

Table truncated, full table size 10031 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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