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Sample GSM1572911 Query DataSets for GSM1572911
Status Public on Jun 03, 2015
Title Frontal of subject 25 (Sample71)
Sample type genomic
Source name Brain Frontal
Organism Homo sapiens
Characteristics tissue: Brain Frontal
subject id: 25
Sex: F
predicted gender: female
age: 59
dna methylation age: 50.2966187130724
age acceleration with respect to noncerebellar samples: 1.06620772393131
cor sample vs gold standard: 0.899325377752666
mean abs difference sample vs gold standard: 0.0827467107655225
postmortem interval: 10
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4811747
cg00000108 0.8965597
cg00000109 0.7585641
cg00000165 0.1493144
cg00000236 0.7651844
cg00000289 0.4045567
cg00000292 0.7401508
cg00000321 0.4438795
cg00000363 0.1463468
cg00000622 0.01376622
cg00000658 0.8261737
cg00000714 0.07418103
cg00000721 0.8632841
cg00000734 0.05966645
cg00000769 0.02268192
cg00000807 0.9082621
cg00000884 0.8069006
cg00000905 0.07833967
cg00000924 0.7095124
cg00000948 0.9482939

Total number of rows: 485577

Table truncated, full table size 10029 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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