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Sample GSM1572909 Query DataSets for GSM1572909
Status Public on Jun 03, 2015
Title Cingulate Gyrus of subject 393 (Sample69)
Sample type genomic
Source name Brain Cingulate Gyrus
Organism Homo sapiens
Characteristics tissue: Brain Cingulate Gyrus
subject id: 393
Sex: M
predicted gender: male
age: 73
dna methylation age: 52.9909831701185
age acceleration with respect to noncerebellar samples: -5.41661317088931
cor sample vs gold standard: 0.864014630911182
mean abs difference sample vs gold standard: 0.0922502113504818
postmortem interval: 13
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.5127738
cg00000108 0.7003891
cg00000109 0.3747241
cg00000165 0.236715
cg00000236 0.455818
cg00000289 0.38006
cg00000292 0.6720327
cg00000321 0.439303
cg00000363 0.151681
cg00000622 0.01379491
cg00000658 0.809705
cg00000714 0.1610258
cg00000721 0.5952783
cg00000734 0.06950208
cg00000769 0.03106906
cg00000807 0.9392154
cg00000884 0.5730801
cg00000905 0.11875
cg00000924 0.5936275
cg00000948 0.8743969

Total number of rows: 485577

Table truncated, full table size 10043 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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