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Sample GSM1572908 Query DataSets for GSM1572908
Status Public on Jun 03, 2015
Title Frontal of subject 45 (Sample68)
Sample type genomic
Source name Brain Frontal
Organism Homo sapiens
Characteristics tissue: Brain Frontal
subject id: 45
Sex: M
predicted gender: male
age: 53
dna methylation age: 42.5538120558458
age acceleration with respect to noncerebellar samples: -2.74351949678099
cor sample vs gold standard: 0.88568318084541
mean abs difference sample vs gold standard: 0.0854083784315284
postmortem interval: 23
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.5438957
cg00000108 0.898828
cg00000109 0.7104053
cg00000165 0.1862661
cg00000236 0.7442265
cg00000289 0.4381188
cg00000292 0.6908475
cg00000321 0.4863676
cg00000363 0.1635338
cg00000622 0.01589218
cg00000658 0.8041439
cg00000714 0.1413225
cg00000721 0.8705258
cg00000734 0.05749309
cg00000769 0.04708656
cg00000807 0.9248844
cg00000884 0.7881837
cg00000905 0.09938049
cg00000924 0.6557451
cg00000948 0.9095186

Total number of rows: 485577

Table truncated, full table size 10039 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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