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Sample GSM1572907 Query DataSets for GSM1572907
Status Public on Jun 03, 2015
Title Cingulate Gyrus of subject 365 (Sample67)
Sample type genomic
Source name Brain Cingulate Gyrus
Organism Homo sapiens
Characteristics tissue: Brain Cingulate Gyrus
subject id: 365
Sex: M
predicted gender: male
age: 64
dna methylation age: 52.8107553136845
age acceleration with respect to noncerebellar samples: 0.302778127448157
cor sample vs gold standard: 0.892055613496031
mean abs difference sample vs gold standard: 0.0841450722564055
postmortem interval: 17
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.447783
cg00000108 0.8775114
cg00000109 0.7164689
cg00000165 0.1406136
cg00000236 0.7653136
cg00000289 0.4871687
cg00000292 0.7341837
cg00000321 0.4446547
cg00000363 0.1339254
cg00000622 0.01807165
cg00000658 0.8031843
cg00000714 0.09622907
cg00000721 0.8955717
cg00000734 0.04695593
cg00000769 0.04819354
cg00000807 0.926049
cg00000884 0.827635
cg00000905 0.1020588
cg00000924 0.6707178
cg00000948 0.9063215

Total number of rows: 485577

Table truncated, full table size 10037 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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