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Sample GSM1572904 Query DataSets for GSM1572904
Status Public on Jun 03, 2015
Title Mid of subject 131 (Sample64)
Sample type genomic
Source name Brain MidBrain
Organism Homo sapiens
Characteristics tissue: Brain MidBrain
subject id: 131
Sex: F
predicted gender: female
age: 111
dna methylation age: 74.0942185287377
age acceleration with respect to noncerebellar samples: -9.22288091019401
cor sample vs gold standard: 0.887111356479953
mean abs difference sample vs gold standard: 0.0840802950822932
postmortem interval: 16
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4320677
cg00000108 0.8367251
cg00000109 0.6536913
cg00000165 0.2168172
cg00000236 0.6276124
cg00000289 0.4489083
cg00000292 0.6896245
cg00000321 0.3923581
cg00000363 0.1893682
cg00000622 0.01568292
cg00000658 0.8627363
cg00000714 0.1713742
cg00000721 0.8875145
cg00000734 0.06667778
cg00000769 0.04540935
cg00000807 0.893693
cg00000884 0.7218009
cg00000905 0.1008281
cg00000924 0.6351492
cg00000948 0.9001076

Total number of rows: 485577

Table truncated, full table size 10042 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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