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Sample GSM1572902 Query DataSets for GSM1572902
Status Public on Jun 03, 2015
Title Caudate Nucleus of subject 283 (Sample62)
Sample type genomic
Source name Brain Caudate Nucleus
Organism Homo sapiens
Characteristics tissue: Brain Caudate Nucleus
subject id: 283
Sex: M
predicted gender: male
age: 32
dna methylation age: 24.9729262582031
age acceleration with respect to noncerebellar samples: -6.55862726662363
cor sample vs gold standard: 0.894638121159646
mean abs difference sample vs gold standard: 0.0848945019933323
postmortem interval: 13
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4461286
cg00000108 0.8923411
cg00000109 0.7524008
cg00000165 0.1989437
cg00000236 0.7885886
cg00000289 0.5335481
cg00000292 0.7125409
cg00000321 0.4480966
cg00000363 0.1801746
cg00000622 0.02531095
cg00000658 0.8414785
cg00000714 0.1808103
cg00000721 0.8552552
cg00000734 0.06359447
cg00000769 0.04681864
cg00000807 0.9081821
cg00000884 0.7691846
cg00000905 0.098125
cg00000924 0.6444815
cg00000948 0.9353718

Total number of rows: 485577

Table truncated, full table size 10025 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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