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Sample GSM1572901 Query DataSets for GSM1572901
Status Public on Jun 03, 2015
Title Hippocampus of subject 351 (Sample61)
Sample type genomic
Source name Brain Hippocampus
Organism Homo sapiens
Characteristics tissue: Brain Hippocampus
subject id: 351
Sex: M
predicted gender: male
age: 82
dna methylation age: 61.314032976715
age acceleration with respect to noncerebellar samples: -2.99318251906425
cor sample vs gold standard: 0.888098437163695
mean abs difference sample vs gold standard: 0.0888922153661736
postmortem interval: 17
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.47
cg00000108 0.9067723
cg00000109 0.6955814
cg00000165 0.2424749
cg00000236 0.8137277
cg00000289 0.5313467
cg00000292 0.6274614
cg00000321 0.4600674
cg00000363 0.1705274
cg00000622 0.03111299
cg00000658 0.8263099
cg00000714 0.08959173
cg00000721 0.8723473
cg00000734 0.07770813
cg00000769 0.04776725
cg00000807 0.8845952
cg00000884 0.7639042
cg00000905 0.1205523
cg00000924 0.6960297
cg00000948 0.8937405

Total number of rows: 485577

Table truncated, full table size 10023 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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