GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1572899 Query DataSets for GSM1572899
Status Public on Jun 03, 2015
Title Temporal of subject 17 (Sample59)
Sample type genomic
Source name Brain Temporal
Organism Homo sapiens
Characteristics tissue: Brain Temporal
subject id: 17
Sex: M
predicted gender: male
age: 15
dna methylation age: 11.7090393804358
age acceleration with respect to noncerebellar samples: -8.67878907426707
cor sample vs gold standard: 0.894907962997574
mean abs difference sample vs gold standard: 0.0845986046503629
postmortem interval: 6
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4373347
cg00000108 0.8822976
cg00000109 0.7637561
cg00000165 0.09877873
cg00000236 0.8044502
cg00000289 0.5333334
cg00000292 0.7762086
cg00000321 0.4986478
cg00000363 0.1523688
cg00000622 0.02659006
cg00000658 0.7912763
cg00000714 0.0914735
cg00000721 0.8724651
cg00000734 0.06953192
cg00000769 0.05736601
cg00000807 0.9035438
cg00000884 0.772028
cg00000905 0.1181187
cg00000924 0.6723875
cg00000948 0.8943585

Total number of rows: 485577

Table truncated, full table size 10031 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap