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Sample GSM1572898 Query DataSets for GSM1572898
Status Public on Jun 03, 2015
Title Frontal of subject 455 (Sample58)
Sample type genomic
Source name Brain Frontal
Organism Homo sapiens
Characteristics tissue: Brain Frontal
subject id: 455
Sex: F
predicted gender: female
age: 65
dna methylation age: 59.9219270330875
age acceleration with respect to noncerebellar samples: 6.7584366074321
cor sample vs gold standard: 0.914351773334812
mean abs difference sample vs gold standard: 0.0782755566461359
postmortem interval: 9
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4341228
cg00000108 0.879312
cg00000109 0.7501992
cg00000165 0.1180735
cg00000236 0.8137131
cg00000289 0.4774355
cg00000292 0.7072806
cg00000321 0.3475772
cg00000363 0.1864091
cg00000622 0.0233381
cg00000658 0.8162846
cg00000714 0.09109561
cg00000721 0.8893095
cg00000734 0.06440701
cg00000769 0.03170863
cg00000807 0.8854183
cg00000884 0.6991124
cg00000905 0.076982
cg00000924 0.6691927
cg00000948 0.910042

Total number of rows: 485577

Table truncated, full table size 10028 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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