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Sample GSM1572895 Query DataSets for GSM1572895
Status Public on Jun 03, 2015
Title Visual Cortex of subject 365 (Sample55)
Sample type genomic
Source name Brain Visual Cortex
Organism Homo sapiens
Characteristics tissue: Brain Visual Cortex
subject id: 365
Sex: M
predicted gender: male
age: 64
dna methylation age: 52.3841974316777
age acceleration with respect to noncerebellar samples: -0.123779754558647
cor sample vs gold standard: 0.887842021685446
mean abs difference sample vs gold standard: 0.0855873070459715
postmortem interval: 17
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.3880441
cg00000108 0.877463
cg00000109 0.6849779
cg00000165 0.1351991
cg00000236 0.8352785
cg00000289 0.5722665
cg00000292 0.7068613
cg00000321 0.4068618
cg00000363 0.1324619
cg00000622 0.03058779
cg00000658 0.7530888
cg00000714 0.1174426
cg00000721 0.8820308
cg00000734 0.05662014
cg00000769 0.04726451
cg00000807 0.9329351
cg00000884 0.7743353
cg00000905 0.1240752
cg00000924 0.6486599
cg00000948 0.9148498

Total number of rows: 485577

Table truncated, full table size 10035 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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