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Sample GSM1572894 Query DataSets for GSM1572894
Status Public on Jun 03, 2015
Title Parietal of subject 437 (Sample54)
Sample type genomic
 
Source name Brain Parietal
Organism Homo sapiens
Characteristics tissue: Brain Parietal
subject id: 437
Sex: F
predicted gender: female
age: 36
dna methylation age: 31.7347343058988
age acceleration with respect to noncerebellar samples: -2.41887217660414
cor sample vs gold standard: 0.885707510367224
mean abs difference sample vs gold standard: 0.085635037059032
postmortem interval: 11
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.3427128
cg00000108 0.8670603
cg00000109 0.6749585
cg00000165 0.2198953
cg00000236 0.7992958
cg00000289 0.3525244
cg00000292 0.7268128
cg00000321 0.3383995
cg00000363 0.1145268
cg00000622 0.0150536
cg00000658 0.8124409
cg00000714 0.05930698
cg00000721 0.8716772
cg00000734 0.05271265
cg00000769 0.03268526
cg00000807 0.912131
cg00000884 0.7337359
cg00000905 0.09084968
cg00000924 0.6175015
cg00000948 0.9029821

Total number of rows: 485577

Table truncated, full table size 10035 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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