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Sample GSM1572893 Query DataSets for GSM1572893
Status Public on Jun 03, 2015
Title Hippocampus of subject 178 (Sample53)
Sample type genomic
Source name Brain Hippocampus
Organism Homo sapiens
Characteristics tissue: Brain Hippocampus
subject id: 178
Sex: M
predicted gender: male
age: 93
dna methylation age: 73.464390394485
age acceleration with respect to noncerebellar samples: 1.94652926509617
cor sample vs gold standard: 0.893515724054739
mean abs difference sample vs gold standard: 0.0834109408483152
postmortem interval: 22
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4891775
cg00000108 0.8913068
cg00000109 0.6959329
cg00000165 0.1712947
cg00000236 0.7958701
cg00000289 0.4802469
cg00000292 0.6038771
cg00000321 0.4542851
cg00000363 0.1594001
cg00000622 0.01924114
cg00000658 0.8064131
cg00000714 0.09309173
cg00000721 0.8899434
cg00000734 0.05973369
cg00000769 0.03049808
cg00000807 0.8767215
cg00000884 0.7582129
cg00000905 0.07921832
cg00000924 0.680961
cg00000948 0.8948283

Total number of rows: 485577

Table truncated, full table size 10039 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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