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Sample GSM1572892 Query DataSets for GSM1572892
Status Public on Jun 03, 2015
Title Frontal of subject 239 (Sample52)
Sample type genomic
Source name Brain Frontal
Organism Homo sapiens
Characteristics tissue: Brain Frontal
subject id: 239
Sex: F
predicted gender: female
age: 100
dna methylation age: 79.7555828288999
age acceleration with respect to noncerebellar samples: 3.64912902357774
cor sample vs gold standard: 0.886091973449132
mean abs difference sample vs gold standard: 0.0855633736471619
postmortem interval: 26
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4446298
cg00000108 0.9019831
cg00000109 0.7049826
cg00000165 0.1920694
cg00000236 0.7469791
cg00000289 0.4997634
cg00000292 0.6772515
cg00000321 0.4175374
cg00000363 0.1741062
cg00000622 0.01570642
cg00000658 0.800145
cg00000714 0.1128617
cg00000721 0.884293
cg00000734 0.0381324
cg00000769 0.03079102
cg00000807 0.9013765
cg00000884 0.7653236
cg00000905 0.0849159
cg00000924 0.6502222
cg00000948 0.882847

Total number of rows: 485577

Table truncated, full table size 10037 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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