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Sample GSM1572891 Query DataSets for GSM1572891
Status Public on Jun 03, 2015
Title Cingulate Gyrus of subject 437 (Sample51)
Sample type genomic
Source name Brain Cingulate Gyrus
Organism Homo sapiens
Characteristics tissue: Brain Cingulate Gyrus
subject id: 437
Sex: F
predicted gender: female
age: 36
dna methylation age: 27.4159716003856
age acceleration with respect to noncerebellar samples: -6.73763488211734
cor sample vs gold standard: 0.890633997359034
mean abs difference sample vs gold standard: 0.100176299611347
postmortem interval: 11
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4768348
cg00000108 0.8882563
cg00000109 0.7041016
cg00000165 0.2622043
cg00000236 0.7443499
cg00000289 0.3925059
cg00000292 0.7596776
cg00000321 0.4524899
cg00000363 0.2285915
cg00000622 0.02309616
cg00000658 0.8664244
cg00000714 0.1561466
cg00000721 0.8711622
cg00000734 0.09558091
cg00000769 0.05697626
cg00000807 0.917241
cg00000884 0.7947728
cg00000905 0.1745339
cg00000924 0.7220413
cg00000948 0.9282076

Total number of rows: 485577

Table truncated, full table size 9997 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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