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Sample GSM1572889 Query DataSets for GSM1572889
Status Public on Jun 03, 2015
Title Motor Cortex of subject 283 (Sample49)
Sample type genomic
Source name Brain Motor Cortex
Organism Homo sapiens
Characteristics tissue: Brain Motor Cortex
subject id: 283
Sex: M
predicted gender: male
age: 32
dna methylation age: 29.3726894367383
age acceleration with respect to noncerebellar samples: -2.15886408808843
cor sample vs gold standard: 0.889342312441174
mean abs difference sample vs gold standard: 0.0874775895629172
postmortem interval: 13
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.5156965
cg00000108 0.9010637
cg00000109 0.6831551
cg00000165 0.2491296
cg00000236 0.7483022
cg00000289 0.3964349
cg00000292 0.7456173
cg00000321 0.5094106
cg00000363 0.2521465
cg00000622 0.0199597
cg00000658 0.8224372
cg00000714 0.144043
cg00000721 0.8944671
cg00000734 0.07210941
cg00000769 0.05086968
cg00000807 0.9026423
cg00000884 0.8088266
cg00000905 0.1153659
cg00000924 0.7239406
cg00000948 0.8791269

Total number of rows: 485577

Table truncated, full table size 10024 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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