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Sample GSM1572888 Query DataSets for GSM1572888
Status Public on Jun 03, 2015
Title Parietal of subject 365 (Sample48)
Sample type genomic
Source name Brain Parietal
Organism Homo sapiens
Characteristics tissue: Brain Parietal
subject id: 365
Sex: M
predicted gender: male
age: 64
dna methylation age: 50.3518527597356
age acceleration with respect to noncerebellar samples: -2.15612442650075
cor sample vs gold standard: 0.888209514122218
mean abs difference sample vs gold standard: 0.0837002787076843
postmortem interval: 17
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.3827161
cg00000108 0.866843
cg00000109 0.6326478
cg00000165 0.1488777
cg00000236 0.7132326
cg00000289 0.3925035
cg00000292 0.7502144
cg00000321 0.4297622
cg00000363 0.1168334
cg00000622 0.02157043
cg00000658 0.8174233
cg00000714 0.07834959
cg00000721 0.8452355
cg00000734 0.05711254
cg00000769 0.03946143
cg00000807 0.9112644
cg00000884 0.8155881
cg00000905 0.09923046
cg00000924 0.6050336
cg00000948 0.8354858

Total number of rows: 485577

Table truncated, full table size 10036 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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