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Sample GSM1572885 Query DataSets for GSM1572885
Status Public on Jun 03, 2015
Title Cingulate Gyrus of subject 87 (Sample45)
Sample type genomic
 
Source name Brain Cingulate Gyrus
Organism Homo sapiens
Characteristics tissue: Brain Cingulate Gyrus
subject id: 87
Sex: M
predicted gender: male
age: 64
dna methylation age: 41.0694745749964
age acceleration with respect to noncerebellar samples: -11.4385026112399
cor sample vs gold standard: 0.894117203251626
mean abs difference sample vs gold standard: 0.0828917668889319
postmortem interval: 7
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.4563977
cg00000108 0.8846107
cg00000109 0.7056206
cg00000165 0.1274868
cg00000236 0.7526788
cg00000289 0.5372529
cg00000292 0.6989796
cg00000321 0.4375732
cg00000363 0.120108
cg00000622 0.02127567
cg00000658 0.841666
cg00000714 0.08721466
cg00000721 0.8864848
cg00000734 0.05900621
cg00000769 0.04457954
cg00000807 0.9136727
cg00000884 0.7677354
cg00000905 0.1003336
cg00000924 0.6710702
cg00000948 0.8735964

Total number of rows: 485577

Table truncated, full table size 10041 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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